A Hub for Probabilistic Analysis for Single-Cell Genomics
To develop scvi-tools 2.0: an accessible and scalable environment for probabilistic modeling for single-cell genomics that enables the next generation of massive-scale studies.
Project Lead: Nir Yosef (Weizmann Institute of Science)
A Unified Framework for Cell-Cell Communication Modeling
To develop an open source, unified framework for cell-cell communication modeling and exploration that is available to the entire scientific community.
Project Lead: Yvan Saeys (VIB-Ghent University)
Accessible Interactive Data Visualizations in Python with Bokeh
To address accessibility gaps in Bokeh, Panel, and Holoviz by incorporating accessibility affordances to ensure everyone can benefit from their powerful data visualization capabilities.
Project Lead: Tania Allard (Quansight Labs)
Advancing Array Interoperability Within the PyData Ecosystem
To advance array interoperability within the PyData Ecosystem by accelerating Array API adoption in key libraries used in biomedical research and building infrastructure for measuring API compliance.
Project Lead: Athan Reines (Quansight)
AnnData for R
To enhance the anndataR package for improved interoperability and functionality in handling single-cell data within the R programming environment.
Project Lead: Robrecht Cannoodt (Open Collective Europe Foundation)
Automated Generation of Galaxy Tools
To develop software that is able to automatically integrate existing open source software into the Galaxy platform. Note: This proposal was funded by Wellcome Trust as part of our co-funded EOSS Cycle 6.
Project Lead: Daniel Blankenberg (The Cleveland Clinic)
Bringing GPU Scientific Visualization to the Web with VisPy 2.0
To bridge the gap between the desktop and the web for large-scale GPU scientific visualization by developing a web version of VisPy 2.0 based on Python, WebAssembly, WebGPU, and Datoviz.
Project Lead: Cyrille Rossant (NumFOCUS)
Bringing Micro-Manager to Classrooms and the Cutting-Edge
To create a versatile, inclusive, open source microscopy platform for diverse global educational and research communities by modernizing and extending Micro-Manager.
Project Lead: Henry Pinkard (NumFOCUS)
Enhancing Interoperability, UI, and Documentation of MOOSE
To enhance the Multiscale Object-Oriented Simulation Environment software package through development of new GUIs, data and model import tools, and tutorials for computational modeling in neuroscience and systems biology. Note: This proposal was funded by The Kavli Foundation as part of our co-funded EOSS Cycle 6.
Project Lead: Upinder Bhalla (National Centre for Biological Sciences)