Molecular Visualization: Transitioning Chimera to ChimeraX
To keep ChimeraX molecular and microscopy analysis software current with the latest technology and facilitate the migration of tens of thousands of Chimera users to ChimeraX.
Project Lead: John Morris (University of California, San Francisco)
Nextflow and nf-core: Reproducible Workflows for the Scientific Community
To continue support for a fast-growing community, building open source software for infrastructure agnostic, open source biomedical analysis workflows.
Project Lead: Ellen Sherwood (KTH Royal Institute of Technology)
Open Health Imaging Foundation (OHIF) and Cornerstone Medical Web Viewer
To partner with hack.diversity to serve as curriculum designers and mentors, equipping their Fellows to contribute to open source web-based medical imaging, as well as mentor existing global OHIF contributors.
Project Lead: Gordon Harris (Massachusetts General Hospital)
Open Source Image Registration: The elastix Toolbox
To improve accessibility, interoperability, efficiency, and sustainability of the biomedical image registration software elastix, by making it a library-first package, allowing integration with other software and improving its performance.
Project Lead: Marius Staring (Leiden University Medical Center)
OpenRefine for Everyone
To continue to diversify contributors by building capacity in project management, as well as offering internships and eliminating cultural or linguistic biases in the Open Refine tool.
Project Lead: Antonin Delpeuch (Code for Science & Society)
Processing of Large Image Data in Fiji: ImgLib2/BigDataViewer Ecosystem
To support the maintenance, development and dissemination of ImgLib2 and BigDataViewer, key infrastructural software components for visualization and analysis of large image data on the Java-based platforms Fiji, KNIME, and Icy.
Project Lead: Pavel Tomancak (Central European Institute of Technology)
QuPath: Boosting Bioimage Analysis for Users & Developers
To enable researchers to more deeply interrogate complex biomedical images by improving the extensibility, robustness, and interoperability of QuPath.
Project Lead: Peter Bankhead (University of Edinburgh)
Raising Diversity and Internationalization in PsychoPy
To hire a dedicated Communities Champion, running code-sprints and contributor workshops and translating our desktop app into additional languages.
Project Lead: Jonathan Peirce (University of Nottingham)
Real-Time Genomic Epidemiology with IQ-TREE
To significantly speed up IQ-TREE to enable real-time genomic epidemiology during ongoing outbreaks such as COVID-19, and to introduce continuous integration and a testing framework to ease software maintenance for all developers.
Project Lead: Minh Bui (Australian National University)