Enhancing the Bactopia Ecosystem with Trainings and Visual Reports
To ensure ongoing maintenance and community growth of Bactopia, focusing on integrating visual reports and comprehensive training materials.
Project Lead: Robert Petit (NumFOCUS)
GPU-accelerated Computing in Bioconductor
To support GPU-accelerated Bioconductor packages through continuous integration, user-friendly packaging of system-level dependencies, and foundational packages for Bioconductor GPU programming.
Project Lead: Levi Waldron (CUNY Graduate School of Public Health and Health Policy)
MetaInsight and CINeMA: Reproducible Evidence for Clinical Decision-Making
to develop the first user-friendly, open source software that synthesizes and evaluates the evidence about the effectiveness and safety of medical interventions and informs treatment decision-making. Note: This proposal was funded by Wellcome Trust as part of our co-funded EOSS Cycle 6.
Project Lead: Alexander Sutton (University of Leicester)
Neurodesk: a platform for reproducible neuroimaging
To develop features for an improved user and developer experience in the Neurodesk platform allowing for easier, portable, scalable, and reproducible neuroscience and biomedical imaging analysis. Note: This proposal was funded by Wellcome Trust as part of our co-funded EOSS Cycle 6.
Project Lead: Steffen Bollmann (The University of Queensland)
OME-Zarr Support for Java/Fiji
To develop a general-purpose Java library for the community standard image file format OME-Zarr, and robustly integrate it into the widespread image processing and analysis software Fiji.
Project Lead: Pavel Tomancak (Max Planck Institute of Molecular Cell Biology and Genetics)
Ontological Resource Tagging and Discovery for Bioconductor
To enhance discoverability and use of Bioconductor packages and data and teaching resources by tagging them with formal vocabulary and concept relations in ontologies like EDAM.
Project Lead: Vincent Carey (Harvard Medical School)
Open Source Image Registration: the Elastix Toolbox
To improve accessibility, efficiency, and sustainability of the biomedical image registration software Elastix, by improving interaction possibilities, speed, and accessibility via a web browser. Note: This proposal was funded by Wellcome Trust as part of our co-funded EOSS Cycle 6.
Project Lead: Marius Staring (Leiden University Medical Center)
Opening Omics Data Science to All with Tidyomics
To administer and expand the scope of the Tidyomics Project, enabling computational biologists to employ a user-friendly grammar to manipulate rich biological datasets across omics and platforms. Note: This proposal was funded by Wellcome Trust as part of our co-funded EOSS Cycle 6.
Project Lead: Michael Love (University of North Carolina Chapel Hill)
OpenMM: A Toolkit for Biomolecular Modeling and Simulation
To grow the OpenMM development community and expand the OpenMM software ecosystem to better serve user needs. Note: This proposal was funded by Wellcome Trust as part of our co-funded EOSS Cycle 6.
Project Lead: Thomas Markland (Stanford University)