Improving the Analytical Flexibility of bedtools
To improve the flexibility and utility of bedtools for large-scale genomic analyses.
Project Lead: Aaron Quinlan (University of Utah)
Improving Usability and Sustainability for NumPy and OpenBLAS
To improve the robustness and usability of NumPy by continuing to work in documentation and community building, modernizing its integration with Fortran tools via numpy.f2py, and ensuring the sustainability of both NumPy and OpenBLAS.
Project Lead: Melissa Mendonça (Quansight)
Inclusive and Accessible Scientific Computing in the Jupyter Ecosystem
To bring systematically marginalized voices of disabled scientists into scientific computing communities via building and applying accessibility tools, standards, and community contribution practices in the Jupyter ecosystem.
Project Lead: Tania Allard (Quansight LLC)
Industry Open Source Diversity Genomics Internship Program
To improve diversity of computational biology and open source development, providing professional industry opportunities for talent underrepresented within the field of genomics.
Project Lead: Carl Kingsford (Ocean Genomics)
Maintenance & Extension of scikit-learn: Machine Learning in Python
To further the sustainability and usability of scikit-learn by reducing the maintenance backlog and extending its machine learning models and pipelines to support more complex datasets.
Project Lead: Thomas Fan (Quansight)
Matplotlib: Foundation of Scientific Visualization in Python
To enable Matplotlib to continue as the core plotting library of the scientific Python ecosystem for researchers in biomedical imaging, microscopy, and genomics by addressing the maintenance backlog and beginning Matplotlib’s evolution to meet the community’s visualization challenges for the next decade.
Project Lead: Thomas A. Caswell (Brookhaven National Laboratory, NumFOCUS)
Matplotlib: Foundation of Scientific Visualization in Python
To support the continued maintenance, growth, development, and community engagement of Matplotlib, the foundational plotting library of the Scientific Python Ecosystem.
Project Lead: Thomas Caswell (Brookhaven National Laboratory, NumFOCUS)
MDAnalysis: Faster, Extensible Molecular Analysis for Reproducible Science
To improve and maintain high-performance tools for analysis of biological systems at the molecular scale and incentivize scientists to drive transparent and reproducible research.
Project Lead: Oliver Beckstein (Arizona State University, NumFOCUS)
Modernizing the igraph Interfaces
To modernize the igraph interfaces to make network analysis easier.
Project Lead: Vincent Traag (Leiden University)